Louis Kessler’s Behold Blog The Behold User Forum
Blog Comments
112.
My Whole Genome Sequencing. The VCF File - Blog comment by teepean - 19 Mar 2019
vanlaargen: Could you share your adjusted 23andMe_V3_hg19_ref.tab.gz, please?
113.
Inferred Segment Matches - Blog comment by jbissett - 7 Mar 2019
Well Louis, you've apparently done it again. I've been surprised that DMT doesn't get the notoriety it deserves. I look forward to version 3.0. Joe
114.
My Whole Genome Sequencing. The VCF File - Blog comment by lkessler - 12 Feb 2019
Interesting. You got over 100,000 more usable SNPs from your combined file than I did. That's a lot. I wonder why.
And thanks for your link to Krahn's program. I'm a Windows guy, but his template will be of interest to me. I'll likely be custom programming my own extract once I get my BAM file.
Yes, Dante ...
115.
My Whole Genome Sequencing. The VCF File - Blog comment by vanlaargen - 10 Feb 2019
"It originally did not accept my VCF from Dante. I contacted Wilhelm and the reason was that Dante did not include RSID values. Wilhelm made the change and sent me a beta of the program for me to try. It now created the raw data file, and correctly did steps 1a, 1b, and 2, above. But he, like GEDmatch, also ...
116.
Genetic Clusters and DNAGedcom - Blog comment by lkessler - 1 Feb 2019
Interesting, Jim. Of course, when someone has mapped as much of their chromosomes as you have, you're a step up on most of us and can leverage that data with other tools. So it is good to know that you found clustering useful on top of everything else you've done.
117.
Genetic Clusters and DNAGedcom - Blog comment by jimbartlett - 1 Feb 2019
Louis, I used the Genetic Affairs method with a download from DNAGedcom. My matrix includes the Notes field from my AncestryDNA Matches. In those Notes I've entered a code for every Common Ancestor I've found (ex: 36P/4C1R) and/or every Match with segment data (from GEDmatch or another company) - an example of ...
118.
Genetic Clusters and DNAGedcom - Blog comment by lkessler - 23 Jan 2019
Thank you Jonathan for your comment, and for creating your Shared Clustering tool. See my next blog post Comparing Genetic Clusters that compares the specific results. I use the 8 people who I know "on paper" how I'm related to, to evaluate the assignment similarities and differences between yours and the ...
119.
Genetic Clusters and DNAGedcom - Blog comment by lkessler - 23 Jan 2019
I do recall, Leah, last summer I tried RootsFinder's their very innovative 3D visualization of triangulations. They even the ability to associate the triangulation "blobs" (if I may call them that) with an ancestor and color them. But that functionality is not possible for AncestryDNA where you do not have ...
120.
Genetic Clusters and DNAGedcom - Blog comment by jonathanb - 21 Jan 2019
Yes, Shared Clustering reads both the m_ and icw_ files. There's some discussion in the documentation. There used to be more, but I got a bunch of questions quickly from people confused about which file to use where. I simplified it all so that you specify one file and the program finds the other on its ...
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Chess and Artificial Intelligence: The Future Changed Today - Blog comment by 12345qaz - 20 Mar 2019